In silico Exploration of Phospholipase A2 Inhibitor Compounds from <i>Lufariella variabilis</i> as Antivenom of <i>Ophiophagus hannah</i>

Authors

  • Romario Dion Biotechnology Study Program, Department of Biology, Faculty of Science and Mathematics, Diponegoro University
  • Muhammad Farrel Ewaldo Biology Study Program, Department of Biology, Faculty of Science and Mathematics, Diponegoro University
  • Muhammad Faishal Fauzaan Biology Study Program, Department of Biology, Faculty of Science and Mathematics, Diponegoro University
  • Ilham Aris Wandi Biotechnology Study Program, Department of Biology, Faculty of Science and Mathematics, Diponegoro University
  • Rina Sari Asih Biotechnology Study Program, Department of Biology, Faculty of Science and Mathematics, Diponegoro University

DOI:

https://doi.org/10.21776/ub.biotropika.2022.010.01.06

Keywords:

King Cobra, Lufariella variabilis, Phospolipase A2

Abstract

The King Cobra (Ophiophagus hannah) is a venomous snake found in Southeast Asia and South Asia. Globally, it is estimated that there are 81,000 to 138,000 cases of snakebite deaths from 1.8 million to 2 million snakebite cases. The limited availability of antivenom is a problem in handling snake venom poisoning. Exploration of natural ingredients is needed as a preventive measurement from the spread of toxins when they are inside the body. Exploration could be carried out by utilizing natural metabolite compounds that can be inhibitors of the phospholipase A2 (PLA2) enzyme. Luffariella variabilis is known as a marine organism that can produce sesterterpenoid compounds and has the potential as an inhibitor of the phospholipase A2 enzyme. This study aims to explore the potential of sesterterpenoid compounds produced by Luffariella variabilis as an in silico inhibitor of phospholipase A2. Several methods used in this research are molecular docking simulation, toxicity test using pkCSM and Toxtree, and chemical bond analysis using Discovery Studio. The results showed that the manoalide compound was the most potent compound of the other sesterterpenoid compounds in its ability to become a snake antivenom candidate.

References

Wintoko R, Prameswari NP (2020) Manajemen Gigitan Ular. JK Unila 1(4): 45-52.

Gutiérrez JM, Calvete JJ, Habib AG, Harrison RA, Williams DJ, Warrell DA (2017) Snakebite envenoming. Nat Rev Dis Primers. 3(17063): 1-20.

Kasturiratne A, Wickremasinghe AR, Silva N (2008) The global burden of snakebite: a literature analysis and modelling based on regional estimates of envenoming and deaths. PLoS Med 5(11): e218.

Medikanto AR, Silalahi LMMV, Sutarni S (2017) Viperidae snake bite: Kasus Serial. Berkala Ilmiah Kedokteran Duta Wacana 2(2): 361-374.

Devkota K, Maharjan B, Mandal DN, Giri R, Goode M (2021). Save the King: Human-King Cobra, Ophiophagus hannah (Cantor 1836), conflicts and the need for conservation strategies in Nepal. Reptiles & Amphibians 28(2): 197-204.

Tan CH, Tan KY, Fung SY, Tan NH (2015) Venom-gland transcriptome and venom proteome of the Malaysian King Cobra (Ophiophagus hannah). BMC Genomics 16(1): 1-21.

Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK (2013) The King Cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. Proceedings of the National Academy of Sciences 110(51): 20651-20656.

Urs NA, Yariswamy M, Joshi V, Nataraju A, Gowda TV, Vishwanath BS (2014) Implications of phytochemicals in snakebite management: present status and future prospective. Toxin Reviews 33(3): 60-83.

Sutantoyo FF, Gunawan EJ (2016) Antikolinesterase untuk gigitan ular dengan bisa neurotoksik. Cermin Dunia Kedokteran 43(1): 14-18.

Folmer F, Jaspars M, Schumacher M, Dicato M, Diederich M (2010) Marine natural products targeting phospholipases A2. Biochemical pharmacology 80(12): 1793-1800.

Hanani E., Mun’im A, Sekarini R (2005) Identifikasi senyawa antioksidan dalam spons Callyspongia sp. dari Kepulauan Seribu. Majalah Ilmu Kefarmasian 3(2): 127-133.

Delmondes PH, Stefani R (2018) Molecular docking studies of natural phenolic compound and derivates with phospholipase A2. Orbital: The Electronic Journal of Chemistry 10(6): 467-74. [13] Takeda AAS, Dos Santos JI, Marcussi S, Silveira LB, Soares AM, Fontes MRM (2004) Crystalliazation and preliminary X-ray diffraction analysis of an acidic phospholipase A2 complexed with p-bromophenacyl bromide and α-tocopherol inhibitors at 1.9 and 1.45 Å resolution. Biochim Biophys Acta 1699: 281-284.

Mathur N, Goswami G, Pathak AN (2016) Structural comparison, docking and substrate interaction study of modeled endo-1, 4-beta xylanase enzyme of Bacillus brevis. Journal of Molecular Graphics and Modelling 74: 337–343.

Marks DB, Marks AD, Smith CM (2000) Basic Medical Biochemistry: A Clinical Approach. Jakarta, Erlangga.

Muttaqin FZ (2019) Molecular docking and molecular dynamic studies of stilbene derivative compounds as sirtuin-3 (Sirt3) histone deacetylase inhibitor on melanoma skin cancer and their toxicities prediction. Journal of Pharmacopolium 2(2).

Pangastuti A, Amin M, Indriwati SE (2016) Mengungkap potensi senyawa alami melalui teknik Reverse Docking. Prosiding Seminar Nasional II, Malang, Universitas Muhammadiyah Malang, 668 – 674.

Burke JE and Dennis EA (2009) Phospolipase A2 biochemistry. Cardiovascular drugs and therapy 23(1): 49-59.

Susanti NMP, Laksmiani NPL, Dewi PPP, Dewi PYC (2019) Molecular docking terpinen-4-ol pada protein IKK sebagai antiinflamasi pada aterosklerosis secara in silico. Jurnal Farmasi Udayana 1(8): 44-49.

Yarla NS, Bishayee A, Vadlakonda L, Chintala R, Duddukuri GR, Reddanna P, Dowluru SVGK (2016) Phospholipase A2 isoforms as novel targets for prevention and treatment of inflammatory and oncologic diseases. Current Drug Targets 17(16): 1940-1962.

Adriani A (2018) Prediksi senyawa bioaktif dari tanaman Sanrego (Lunasia amara Blanco) sebagai inhibitor enzim siklooksigenase-2 (Cox-2) melalui pendekatan molecular docking. Jurnal Ilmiah Pena: Sains dan Ilmu Pendidikan 10(1): 6-11.

Wahyudi E (2015) Studi hubungan kuantitatif struktur aktivitas dari amidasi senyawa etil-p-metoksisinamat sebagai antiinflamasi dengan pendekatan Hansch dan komputasi. Skripsi. UIN Syarif Hidayatullah Jakarta. Fakultas Kedokteran dan Ilmu Kesehatan. http://repository.uinjkt.ac.id/dspace/handle/123456789/29146.

Pollastri MP (2010) Overview on the rule of five. Current protocols in pharmacology 49(1): 9-12.

Testa B, Carrupt PA, Gaillard P, Billois F, Weber P (1996) Lipophilicity in molecular modeling. Pharm. Res. 13: 335-343.

Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (1997) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Advanced drug delivery reviews 23(1-3): 3-25.

Suhadi A, Rizarullah R, Feriyani F (2019) Simulasi docking senyawa aktif daun binahong sebagai inhibitor enzyme aldose reductase. Sel Jurnal Penelitian Kesehatan 6(2): 55-65.

Barbezan AB, Martins R, Bueno JB, Villavicencio ALC (2017) Ames test to detect mutagenicity of 2â€alkylcyclobutanones: A review. Journal of Food Science 82(7): 1518-1522.

Kesuma D, Purwanto BT, Hardjono S (2018) Uji in silico aktivitas sitotoksik dan toksisitas senyawa turunan N-(Benzoil)-N’-feniltiourea sebagai calon obat antikanker. Journal of Pharmaceutical Science and Clinical Research 3(1): 1-11.

Norma N, Latif UTA, Usman S (2014) Efek hepatotoksisitas ekstrak etanol herba kompri (Symphytum officinale L.) terhadap hewan uji kelinci (Oryctolagus cuniculus) dengan parameter SGOT dan SGPT. Biogenesis: Jurnal Ilmiah Biologi 2(1): 11-15.

Khazanov NA, Carlson HA (2013) Exploring the composition of protein-ligand binding sites on a large scale. PLoS Computational Biology 9(11): e1003321. [31] Kilo AL (2018) Kimia Anorganik Struktur dan Kereaktifan. Gorontalo, UNG Press Gorontalo.

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Published

2022-03-31

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